From a safety standpoint, I always swapped in a standard BCG and fired a few 5.56 rounds at the end of every range session just to be sure. Really cheap insurance to keep the rifle fully functional.
Accuracy with the drop in conversion was always suboptimal for me. Doesn't CMMG sell a barrel that replaces the chamber adapter? If you don't plan on shooting 5.56 in that rifle anymore, you could probably sell the barrel/BCG combo on the EE and fund a dedicated barrel in .22lr.