I have used RE Super Flex, EVO Plush Ride, AEV HD, and Teraflex Outbacks on my JK's. What I have found to work best is going to first look at your normal driving habits and the abnormal thing your JP does for you - rock crawling, mud dragging, forest road bombing, overlanding, pavement DDing. After that look at your normal weight (DD) and your weight when your in the abnormal driving condition (loaded like a semi for overlanding).
Once you know that you can really dial in what you're trying to do. The easy answer is coils, shocks, control arm angle and control arm end material really all determine ride quality. A rubber control arm end will give you a better ride vs a poly end. But it will be prone to stretch, warp and tear if you rock crawl. Shocls that are plush when you are empty and DDing won't dampen a thing when you load out +1000 lbs for the big 3 week overlanding trip. Etc, etc.
Front and rear bumpers, winch, tire carrier, sliders, armor, fridge, drawers, etc. It all adds up.
To answer your question more directly, my RE rubber bushing control arms, RE springs and Rancho adjustable shocks have been as near factory ride as I've seen on a JKU with the standard stuff done to it that sees some weekend rock crawling, daily driving, and trail bombing. Loaded for a trip the rear sags and it gets pitchy in the curves. The EVO suspension paired with adjustable Ranchos is noticeably sharper on the highway at bridge transitions but not brutal. But off road the flex is insane. The Teraflex and AEVE coils with adjustable shocks are brutal if I'm not loaded for overlanding, but plush once I get close to the 800-1000 lbs extra weight mark. I'm about to try a set of Teraflex Alpine IR control arms which are a combo of flex and factory rubber style bushing.