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It is not really a good idea to nitride barrels after the fact that should honestly be done during the manufacturing process.
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It'll be just fine as long as it's cleaned thoroughly if it has been shot already.
Do it, OP. My former coworker is a nitride whore. He's taken a few dozen barrels in to be treated, most of which were shot beforehand. None shot worse after treatment, and now they're better protected against corrosion.